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Bionano Genomics (BNGO) investor relations material

Bionano Genomics Q3 2025 earnings summary

Complete event summary combining all related documents: earnings call transcript, report, and slide presentation.
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Q3 2025 earnings summary13 Nov, 2025

Executive summary

  • Q3 2025 revenue was $7.4 million, with year-over-year growth reported as both up 21% and down 21% due to differences in core versus total revenue; product revenue rose 15%, and flowcell sales increased 7% year-over-year.

  • Strategic focus on routine users, consumables, and software drove revenue growth and improved margins, supported by disciplined expense management.

  • Installed base expanded to 384 OGM systems, with notable growth in key geographies and new regions like Japan.

  • Net loss for Q3 2025 was $8.5 million, a significant improvement from $44.2 million in Q3 2024, driven by cost-saving initiatives and reduced operating expenses.

  • Cash, cash equivalents, and short-term investments totaled $31.8 million at quarter-end, following a $10 million public offering.

Financial highlights

  • Q3 2025 revenue reached $7.4 million, with core revenue up 12% after adjusting for discontinued services; product revenue was $6.9 million, up 15% year-over-year.

  • Sold 8,390 flowcells in Q3 2025, a 7% increase year-over-year; instrument revenue reached $1.6 million.

  • Non-GAAP gross margin improved to 46% from 26% in Q3 2024; GAAP gross margin was 46%, up from (139)% in Q3 2024.

  • Non-GAAP operating expense was $9.7 million, down 40% year-over-year; GAAP operating expenses were $11.9 million, down 66%.

  • Ended Q3 with $31.8 million in cash, cash equivalents, and short-term investments; $10.3 million subject to restrictions.

Outlook and guidance

  • Full-year 2025 revenue guidance reiterated at $26–30 million.

  • Q4 2025 revenue expected between $7.5–$7.9 million.

  • System installations projected to surpass 25 for the year, exceeding prior guidance.

  • Management expects continued operating losses and negative cash flows for at least the next year; current resources expected to fund operations into Q3 2026.

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Frequently asked questions

Bionano Genomics provides genome analysis software solutions for structural variation discovery and genome assembly enhancement. The Company's Saphyr system is a platform for ultra-sensitive and ultra-specific structural variation detection that enables researchers and clinicians to accelerate the search for new diagnostics and therapeutic targets and to streamline the characterization of these targets. The company was founded in 2003 and is headquartered in San Diego, California.

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